PhyloBayes-MPI is a Bayesian Markov chain Monte Carlo (MCMC) sampler for phyloge- netic inference exploiting a message-passing-interface system for multi-core computing. The program will perform phylogenetic reconstruction using either nucleotide, protein, or codon sequence alignments. Compared to other phylogenetic MCMC samplers, the main distin- guishing feature of PhyloBayes is the use of non-parametric methods for modeling among-site variation in nucleotide or amino-acid propensities.

Resources

• Downloadable user manual.

Users may direct questions to sys-help@loni.org.