idba

About

IDBA is a practical iterative De Bruijn Graph De Novo Assembler for sequence assembly in bioinfomatics. Most assemblers based on de Bruijn graph build a de Bruijn graph with a specific k to perform the assembling task. For all of them, it is very crucial to find a specific value of k. If k is too large, there will be a lot of gap problems in the graph. If k is too small, there will a lot of branch problems. IDBA uses not only one specific k but a range of k values to build the iterative de Bruijn graph. It can keep all the information in graphs with different k values. So, it will perform better than other assemblers.

Versions and Availability

Module Names for idba on qb2
Machine Version Module Name
None Available N/A N/A
▶ **FIX-ME** FAQ?

Usage

Under construction.

Resources

Last modified: November 14 2014 10:03:48.