MUSCLE is proported to be one of the best-performing multiple alignment programs according to published benchmark tests, with accuracy and speed that are consistently better than CLUSTALW. MUSCLE can align hundreds of sequences in seconds. Most users learn everything they need to know about MUSCLE in a few minutes — only a handful of command-line options are needed to perform common alignment tasks.

Versions and Availability

Module Names for muscle on smic
Machine Version Module Name
smic 3.8.31 muscle/3.8.31
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Please refer to the software homepage and on-line documention in the Resources section.


Last modified: June 17 2015 11:29:37.