Oases is a de novo transcriptome assembler designed to produce transcripts from short read sequencing technologies, such as Illumina, SOLiD, or 454 in the absence of any genomic assembly. Oases uploads a preliminary assembly produced by Velvet, and clusters the contigs into small groups, called loci. It then exploits the paired-end read and long read information, when available, to construct transcript isoforms.

Versions and Availability

Module Names for oases on smic
Machine Version Module Name
smic 0.2.8 oases/0.2.8/INTEL-14.0.2
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Please refer to the Resources section for detailed usage documentation.


Last modified: June 25 2015 12:56:42.