velvet

About

Velvet is a de novo genomic assembler specially designed for short read sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near Cambridge, in the United Kingdom. Velvet currently takes in short read sequences, removes errors then produces high quality unique contigs. It then uses paired-end read and long read information, when available, to retrieve the repeated areas between contigs.

Versions and Availability

Module Names for velvet on smic
Machine Version Module Name
smic 1.2.10 velvet/1.2.10/INTEL-14.0.2
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Usage

Please refer to the links in the Resources section for detailed usage information.

Resources

Last modified: July 06 2015 14:34:42.